GetWorklist: getWorklist

In jaspershen/metflow2: Comprehensitive tools for metabolomics data processing and data analysis

Description

Generate sample and worklist.

Usage

getWorklist(
  table.name = "batch.xlsx",
  instrument = c("Thermo", "Agilent", "AB"),
  each.mode.number = 32,
  randommethod = c("no", "position", "injection"),
  samplenumber = NULL,
  QCstep = 8,
  conditionQCnumber = 8,
  qc.index.from = 1,
  dir = "D:\\Liang\\data\\PS4U\\HILIC\\batch3\\",
  method.path = "D:\\Liang\\Method\\urine\\HILIC\\",
  ms1.method.pos = "ZIC-HILIC_MS_pos",
  ms1.method.neg = "ZIC-HILIC_MS_neg",
  ms2.method.pos = c("ZIC-HILIC_MSMS_pos_NCE25", "ZIC-HILIC_MSMS_pos_NCE25",
    "ZIC-HILIC_MSMS_pos_NCE25", "ZIC-HILIC_MSMS_pos_NCE25"),
  ms2.method.neg = c("ZIC-HILIC_MSMS_neg_NCE25", "ZIC-HILIC_MSMS_neg_NCE25",
    "ZIC-HILIC_MSMS_neg_NCE25", "ZIC-HILIC_MSMS_neg_NCE25"),
  path = "."
)

Arguments

table.name	Sample name.
instrument	instrument.
each.mode.number	each.mode.number.
randommethod	See xcms.
samplenumber	See xcms.
QCstep	See xcms.
conditionQCnumber	See xcms.
qc.index.from	Number of threads.
dir	dir.
method.path	method.path.
ms1.method.pos	ms1.method.pos.
ms1.method.neg	ms1.method.neg.
ms2.method.pos	ms2.method.pos.
ms2.method.neg	ms2.method.neg.
path	The working directory.

Value

Peak table.

Author(s)

Xiaotao Shen [e-mail]

jaspershen/metflow2 documentation built on Aug. 15, 2021, 4:38 p.m.