Man pages for javirudolph/StabilityToolkit
Statistical inference for bacterial stability assays
| bblogist.sim | Simulates data picking from a beta binomial |
| dynamic.fit | General function to fit either the SS model or the HT model |
| flexss.bootstrappedMLEs | Maximum Likelihood estimation of the SS model parameters... |
| HT.bootstrappedMLEs | Maximum Likelihood estimation of the HT model parameters... |
| HTdatasim | Simulates picking colonies data from a serial transfer... |
| HT.predict | Computing the fraction over time of the plasmid-free cells in... |
| jointflexssMLEs | Joint Maximum Likelihood estimation of the SS model... |
| joint.negllSS.flex | joint likelihod from a competition experiment and initial... |
| joint.vs.sep.fit | Comparisson between fits |
| loss.time | Function to compute the time (in generations) it takes for a... |
| negll.bblogist | Log likelihood for beta binomial model |
| negllSS.flex | Computes the negative log-likelihood for the Segregation... |
| negllSS.flex.nobeta0 | Computes the negative log-likelihood for the Segregation... |
| negloglikeHT | Computes the negative log-likelihood for the Horizontal... |
| negloglikeHT.comb | Joint likelihood for two different stability assays are the... |
| negloglikeSS | Computes the negative log-likelihood for the Segregation... |
| negloglikeSS.comb | Joint likelihood for two different stability assays |
| pairwise.fitHT | Joint estimation of the HT model parameters |
| pairwise.fitSS | Joint estimation of the SS model parameters |
| SSdatasim | Simulates picking colonies data from a serial transfer... |
| SS.predict | Computes the solution of the difference equation for the... |
| StabilityToolkit-package | StabilityToolkit: Statistical inference for bacterial... |
| vs.sim | Data simulation under the variable selection model |
