SS.predict: Computes the solution of the difference equation for the...

In javirudolph/StabilityToolkit: Statistical inference for bacterial stability assays

Description

Computes the solution of the difference equation for the fraction of plasmid-free cells for the Segregation Selection model. The output is a time series of the fraction of plasmid-free cells See De Gelder et al 2004, 2008 and Ponciano et al 2007.

Usage

SS.predict(beta.o, lam, sig, days, gen)

Arguments

beta.o	Initial fraction of plasmid free cells
lam	Segregation rate (a number between 0 and 1)
sig	plasmid cost. Usually sig>0 but if -1<sig<0, then this parameter represents the benefit of having a plasmid
days	vector
gen	Number of generations per day

Value

a vector of same length as 'says' with the fraction of plasmid free cells

Examples

SS.predict(beta.o=0.01, lam=0.003,sig=0.4, days=7, gen=10)

javirudolph/StabilityToolkit documentation built on Jan. 3, 2021, 11:29 p.m.