HT.predict: Computing the fraction over time of the plasmid-free cells in...

In javirudolph/StabilityToolkit: Statistical inference for bacterial stability assays

Description

Function to compute the fraction over time of the plasmid-free cells in a stability assay assuming that Horizontal transfer is taking place See Ponciano et al 2007.

Usage

HT.predict(beta.o, lam, sig, theta, gam, days, gen)

Arguments

beta.o	Initial fraction of plasmid free cells
lam	Segregation rate (a number between 0 and 1)
sig	plasmid cost. Usually sig>0 but if -1<sig<0, then this parameter represents the benefit of having a plasmid
theta	fraction of plasmid free cells at which the horizontal transfer attains half its maximum
gam	Horizontal transfer probability
days	vector
gen	Number of generations per day

javirudolph/StabilityToolkit documentation built on Jan. 3, 2021, 11:29 p.m.