overlapPlotWindow: Plot overlap or excess within specified window.
In jbhender/camtrap: Inference for camera trap data.

Description Usage Arguments Details Value Examples

Densities are plotted for the entire day, but the overlap or excess are only shown within the requested window.

overlapPlotWindow(A, B, t0 = 0, t1 = 24, type = c("both", "overlap",
  "excess"), xscale = 24, xcenter = c("noon", "midnight"), extend = NULL,
  linetype = c("solid", "solid"), linecol = c("black", "blue"),
  linewidth = c(1, 1), overlapcol = "lightblue", excesscol = "lightgrey",
  mark.window = T, adjust = 0.8, kmax = 3, n.grid = 1000, ...)

`A`	Numeric vectors of sighting times in [0,2pi]
`B`	Numeric vectors of sighting times in [0,2pi]
`t0, t1`	Window times are not scaled internally and should chosen by the user to reflect `xscale`. They are shifter internally to reflect `xcenter`.
`type`	Character string with `overlap` to plot the overlap, `excess` to plot the area between the densities or `both` (default) for both. Partial matching okay.
`xscale`	scale for x-axis: default is 24 for time in hours, `xscale=NA` produces a scale in radians
`xcenter`	where to center the x-axis: 'noon' (default) or 'midnight'
`extend`	If not `NULL`, the plot is extended by 3 hours on both sides to emphasize the circularity and `extend` specifies the color.
`linecol`	The colors to use for plotting the densities curves.
`overlapcol, excesscol`	The color(s) to use for plotting the overlap or excess, respectively.
`mark.window`	Logical indicating whether to plot vertical lines at the window boundaries.
`adjust`	See `overlapEst`.
`kmax`	See `overlapEst`.

This function is intended to resemble overlapPlot from the overlap package with credit to its author, Mike Meredith. However, not all functionality from that function has been put in place here yet – rug plotting reamins to do. Currently does not handle wrapping of window around edges of plot.

None. Plots to the current device.