dataCheck: dataCheck.R

In jbindman/prostate-project: Prostate Cancer Outcome Predictor

Description

Check if loaded patient data has values within acceptable range. See vignette for restrictions on data.

Usage

dataCheck(demo.data = demo_data, psa.data = psa_data, bx.data = bx_data,
  surg.data = surg_data)

Arguments

demo.data	Patient-level data. This dataframe should contain one record (row) per patient. Variables (columns) must include a unique identifier (ID) and valid date of birth for each patient.
psa.data	PSA data. This dataframe should contain one record per PSA test (per patient). Variables must include patient ID, date of test, and total PSA observed.
bx.data	Biopsy data. This dataframe should contain one record per biopsy (per patient). Variables must include patient ID, date of biopsy, indicator of grade reclassication, and prostate volume (if assessed).
surg.data	Surgery data. This dataframe should contain one record per surgery performed. Variables must include patient ID, surgery date, and Gleason score (GS) assessed on entire specimen.

jbindman/prostate-project documentation built on May 18, 2019, 5:59 p.m.