Description Usage Arguments Value
Load dataframes from four patient data files generated in the course of Active Surveillance in order to create a list of formatted patient dataframes for analysis. See vignette for required variable names and format.
1 | fillPatientTables(demo.data, psa.data, bx.data, surg.data, IOP = TRUE)
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demo.data |
Patient-level data. This dataframe should contain one record (row) per patient. Variables (columns) must include a unique identifier (ID) and valid date of birth for each patient. |
psa.data |
PSA data. This dataframe should contain one record per PSA test (per patient). Variables must include patient ID, date of test, and total PSA observed. |
bx.data |
Biopsy data. This dataframe should contain one record per biopsy (per patient). Variables must include patient ID, date of biopsy, indicator of grade reclassication, and prostate volume (if assessed). |
surg.data |
Surgery data. This dataframe should contain one record per surgery performed. Variables must include patient ID, surgery date, and Gleason score (GS) assessed on entire specimen. |
IOP |
TRUE if biopsy and surgery occurences are informative of the underlying GS, FALSE if non-informative. |
List of three dataframes for analysis: pt.data, psa.data, bx.full. See vignette for examples.
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