Description Usage Arguments Value
View source: R/label_compare.R
Calculate the proportion of labelling of the isotopologues found for each group of features and statistically compare them. If only one condition is available only the labelling proportions are reported
1 2 3 4 5 6 7 8 9 | label_compare(
geoRgeR = NULL,
XCMSet = NULL,
ppm.s = NULL,
control.cond = NULL,
fc.vs.Control = 1,
p.value.vs.Control = 0.05,
Show.bp = T
)
|
geoRgeR |
Result of basepeak_finder |
XCMSet |
The xcmsSet with labelled and unlabelled samples |
ppm.s |
ppm window to use to search the monoisotopic peak |
control.cond |
Condition tag to be used as reference for the Welch t.test statistics |
fc.vs.Control |
Default fold-change value to applied to report changes between different conditions |
p.value.vs.Control |
Default p-value to applied to report changes between different conditions |
Show.bp |
Boolean that switches if the monoisotopic labelling percentages should be reported in the output table |
Dataframe with results of comparing the enrichment between control.cond
and the rest of conditions
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