refinegeoRge: Refine basepeak_finder Results
In jcapelladesto/geoRge: Isotopic label tracking for untargeted metabolomics
Description
Usage
Arguments
Value
Note
View source: R/basepeak_finder.R
Description
Performs a cleaning step of geoRge results based on number of isotopologues and correlation
Usage
1
refinegeoRge(finderR, minAtoms = 3, maxAtoms = 50, minCorr = 0.25)
Arguments
minAtoms
Minimum number of atoms of an inc_id cluster
maxAtoms
Maximum number of atoms of an inc_id cluster
minCorr
Minimum stats::cor correlation of M0 and Mn isotopologues along labelled samples.
PuIncR
Result of basepeak_finder
Value
A refined geoRge data.frame object.
Note
Depending on the number of samples, the correlation value may be oversensitive, be careful with this argument.
jcapelladesto/geoRge documentation built on Sept. 18, 2021, 2:05 p.m.
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Description Usage Arguments Value Note
View source: R/basepeak_finder.R
Description
Performs a cleaning step of geoRge results based on number of isotopologues and correlation
Usage
1 | refinegeoRge(finderR, minAtoms = 3, maxAtoms = 50, minCorr = 0.25)
|
Arguments
minAtoms |
Minimum number of atoms of an inc_id cluster |
maxAtoms |
Maximum number of atoms of an inc_id cluster |
minCorr |
Minimum stats::cor correlation of M0 and Mn isotopologues along labelled samples. |
PuIncR |
Result of basepeak_finder |
Value
A refined geoRge data.frame object.
Note
Depending on the number of samples, the correlation value may be oversensitive, be careful with this argument.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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