Description Usage Arguments Value Note
Raw data plotting average spectra of all SampleFiles and compound for quality control pourposes
1 2 3 4 5 6 7 8 | meanRawPlot(
SampleFiles = NULL,
formulaTable = NULL,
RTwin = 5,
ppm = 1,
rm.bg = FALSE,
topdf = NULL
)
|
SampleFiles |
List of files to be plotted (see base::list.files()) |
formulaTable |
Data.frame including CompoundName, Formula, mz, RT and NumAtoms (see buildFormulaTable) |
RTwin |
Retention time window (in seconds) to extract the metabolite isotopologues (default=5) |
ppm |
Expected realtive mass accuracy if high-resolution data is used (default=1) |
rm.bg |
Remove background noise intensity (default=FALSE) |
topdf |
File directory where the plots will be saved in pdf format. One pdf file per mzML file in Sampledir |
Plots per each file and compound including all isotopologues
To plot files separately, use rawPlot
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