OrderShapeEM.control: Set the control parameters for OrderShapeEM

In jchen1981/OrderShapeEM: Optimal false discovery rate control using auxiliary (order) information based on a shape-constrained EM algorithm

Description

The function provides an interface to set the parameters for OrderShapeEM.

Usage

OrderShapeEM.control(
  maxIter = 250,
  tol = 0.001,
  trace = FALSE,
  pi0.init = 0.95,
  k.init = 0.75,
  pvals.cutoff = 1e-15
)

Arguments

maxIter	an integer value indicating the maximum number of iterations. Default is 250.
tol	a numeric value giving the tolerance in the relative change in the log likelihood below which the algorithm is considered to be converged. Default is 1e-3.
trace	a logical value indicating whether to print out the EM process. Default is FALSE.
pi0.init	a scalar giving the initial estimates of pi0. Default is 0.95.
k.init	a scalar giving the initial estimates of f1. f1 is approximated by a beta distribution with the shape parameter k. Default is 0.75.
pvals.cutoff	a numeric value to replace p-values below that value, which is used to increase the stability of the algorithm. Default is 1e-15.

Value

A list with the set control parameters.

jchen1981/OrderShapeEM documentation built on March 9, 2021, 12:19 a.m.