A collection of plotting functions.

convert.size | Convert a 2D size from one unit to another. |

linear.heatmap | Plot values as linear heatmaps. |

make.cb.pal | Create an arbitrary-sized palette from an RColorBrewer... |

make.ramp | Generate a color ramp function for a given pallate and... |

manhattan | Generic Manhattan plotting function. Requires a data frame... |

manhattan.bayes | Manhattan plot for results from Bayesian analysis. Requires... |

manhattan.bimbam | Plot results of BIMBAM run. Draws manhattan plots based on... |

manhattan.freq | Manhattan plot for results from frequentist analysis.... |

plot.effects | Effect size plotting function. Requires a data frame with at... |

plot.genome.data | Plot data on one or more chromosomes as a function of genomic... |

plot.matrix | Plot a matrix as a heatmap. |

plot.table | Print a table as a figure using grid graphics. |

plottree | Plot a newick tree using ADE. |

plottree.phylo | Convenience function to plot an ADE phylo. |

plot.venn | Draw a Venn diagram of intersections between lists of items.... |

Base graphics qq plot | |

radial.phylog | Draw a radial tree for an ade4 phylog object. |

rgb.alpha | Modifiy colors (names or rgb vectors) with an alpha value. |

simplex.triangle | A simplex is a way to plot a specific type of multi-variate... |

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