manhattan.freq: Manhattan plot for results from frequentist analysis....

Description Usage Note

Description

Manhattan plot for results from frequentist analysis. Requires at least 3 column data frame: CHR, BP, and P, corresponding to chromosome number, genomic coordinate, and p-value. Missing values (where regression failed to converge, for instance) should be recoded NA before reading into R. The plot alternates between two colors.

Usage

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manhattan.freq(d, mapping = NULL, colors = c("steelblue", "gray50"),
  chrms = 1:19, threshold = c(1e-05, 1e-08),
  sub = "Frequentist Association", ...)

Note

Copied and modified from Stephen Turner (http://GettingGeneticsDone.blogspot.com/).


jdidion/fancyplots documentation built on May 18, 2019, 11:30 p.m.