get_groups: Compile group data from individual brains.

In jdknguyen/SMART: SMART (Semi-manual alignment to reference template): a pipeline for whole brain mapping projects

Compile group data from individual brains.

Description

Uses output of cell_count_compilation() to calculate the mean and standard deviation of every user-specified test group.

Usage

get_groups(
  input = NULL,
  brains_list = c(),
  groups_list = c(),
  groups = c(),
  output = NULL
)

Arguments

input	(required, default = NULL) Path to .csv file to be used, the output of cell_count_compilation().
brains_list	(required, default = c()) Vector of brain names (column headers in .csv file).
groups_list	(required, default = c()) Vector corresponding to brains_list that specifies the group name for each brain.
groups	(required, default = c()) Vector of groups.
output	(required, default = NULL) Path to .csv file to be created.

Value

Returns an object containing regional cell count means and standard deviations for each test group.

jdknguyen/SMART documentation built on May 30, 2022, 10:51 p.m.