glassbrain2: Modified glassbrain function

In jdknguyen/SMART: SMART (Semi-manual alignment to reference template): a pipeline for whole brain mapping projects

Modified glassbrain function

Description

A modified version of glassbrain() that

1. Gives the user an option to plot the "jitter" in cell placement in original glassbrain function (the jitter gives a more space filled look) .

2. Does not show the glass brain display when high.res is set to "OFF" (otherwise set to TRUE or FALSE).

Usage

glassbrain2(
  dataset,
  high.res = "OFF",
  dim = c(720, 1080),
  device = TRUE,
  col = "region",
  cex = 0.5,
  hemisphere = "right",
  spheres = FALSE,
  alpha = 1,
  laterality = TRUE,
  plane = "coronal",
  jitter = FALSE
)

Arguments

dataset	(required) Cell count dataset
high.res	(default = "OFF") TRUE or FALSE sets high or low resolution glassbrain. "OFF" doesn't plot plot the glassbrain. Options: "OFF", TRUE, FALSE
dim	(default = c(720, 1080)) Original argument from glassbrain().
device	(default = TRUE) Original argument from glassbrain().
col	(default = "region") Original argument from glassbrain().
cex	(default = 0.5) Graphical parameter for text size.
hemisphere	(default = "right") Original argument from glassbrain().
spheres	(default = FALSE) Original argument from glassbrain().
alpha	(default = 1) Original argument from glassbrain()].
laterality	(default = TRUE) Original argument from glassbrain().
plane	(default = "coronal") Original argument from glassbrain().
jitter	(default = FALSE) If TRUE, add jitter in z-axis to fill space between z-planes.

jdknguyen/SMART documentation built on May 30, 2022, 10:51 p.m.