limma_contrasts_chunk: Limma contrasts chunk

In jdreyf/bioinformd: Construct RMD analysis files

Limma contrasts chunk

Description

Limma contrasts chunk.

Usage

limma_contrasts_chunk(
  grp.var,
  contr.v,
  path,
  proj.nm,
  limma.model = NULL,
  use_aw = TRUE,
  use_trend = FALSE,
  use_annot = TRUE,
  row.type = "gene",
  elst = FALSE
)

Arguments

grp.var	Variable name in pheno for group.
contr.v	Named vector of contrasts.
path	Path of RMD.
proj.nm	Name of project to paste into filenames.
limma.model	Model formula for arrayWeights.
use_aw	Logical indicating if array weights should be used.
use_trend	Logical indicating if limma trend should be used.
use_annot	Should annot be used.
row.type	Character in filename for features.
elst	Logical indicating if expression object an EList.

jdreyf/bioinformd documentation built on June 14, 2025, 10:59 p.m.