aggregate_sims: Aggregate simulations
In jean997/jadeSims:

Aggregate results of simulations

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aggregate_sims(file.prefix, profiles, save.file = NULL, which.reps = 1:60,
  tol = 0.005, level = 0.1, run.cv = TRUE, clean.jade = FALSE,
  use.cv = TRUE)

`file.prefix`	File prefix
`profiles`	Mean values
`save.file`	Optional output file
`tol`	Threshold for declaring sites separated
`level`	Level at which to calcluate average true and false positive rate
`run.cv`	For JADE, calculate cv error if it hasn't been run already.
`which.rep`	Which simulations (length B)

A list with elements #'

names: Name of each method in order
all.stats: B x n x F array of statistic values for alternative methods.
site.labels: Which sites are separated
tol, level: Parameters passed in
avg.tpr, avg.fpr: Average true and false positive rates at given level and for JADE (14th column)