aggregate_sims: Aggregate simulations

Description Usage Arguments Value

View source: R/aggregate_sims.R

Description

Aggregate results of simulations

Usage

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aggregate_sims(file.prefix, profiles, save.file = NULL, which.reps = 1:60,
  tol = 0.005, level = 0.1, run.cv = TRUE, clean.jade = FALSE,
  use.cv = TRUE)

Arguments

file.prefix

File prefix

profiles

Mean values

save.file

Optional output file

tol

Threshold for declaring sites separated

level

Level at which to calcluate average true and false positive rate

run.cv

For JADE, calculate cv error if it hasn't been run already.

which.rep

Which simulations (length B)

Value

A list with elements #'

names

Name of each method in order

all.stats

B x n x F array of statistic values for alternative methods.

site.labels

Which sites are separated

tol, level

Parameters passed in

avg.tpr, avg.fpr

Average true and false positive rates at given level and for JADE (14th column)


jean997/jadeSims documentation built on May 17, 2017, 3:15 p.m.