| aaaq | Amino acid group additivity |
| aoscp | Average oxidation state of carbon in proteins |
| bison | Relative stabilities of proteins inferred from a hot-spring... |
| canH2O | Water as a reactant in the differential expression of... |
| carrollite | Carrollite stability |
| chem16S | Community-level chemical metrics |
| chnosz10 | Thermodynamic calculations and diagrams for geochemistry |
| cpcp | Chemical portraits of cancer proteomes |
| devodata | Data from developmental proteomics studies |
| diffexpr | Functions for processing differential expression datasets |
| dunnTest | Dunn's Kruskal-Wallis Multiple Comparisons |
| evdevH2O | Water activity and redox potential in evolution and... |
| genoGOE | Earth's oxygenation recorded in genomes |
| geo16S | Chemical links between redox conditions and community... |
| gradH2O | Signatures of salinity gradients in the chemical composition... |
| grad_mplot | Plotting functions for chemical composition of metagenomes |
| gradox | Carbon oxidation state of proteins inferred from metagenomes... |
| JMDplots-package | Plots from papers by Jeffrey M. Dick |
| MaximAct | Calculate optimal \logaH2O and \logfO2 for target proteins |
| microhum | Adaptations of microbial genomes to human body chemistry |
| mjenergy | Energy release during protein synthesis at ultramafic-hosted... |
| orp16S | Influence of redox potential on bacterial protein evolution |
| orp16S_util | Plotting functions for orp16S paper |
| pdat_ | Get protein expression data |
| plot_starburst | Starburst plot for parent and children taxa |
| PS | Retrieve phylostrata for given UniProt IDs |
| scsc | Yeast subcellular location |
| subsurface | User-provided data for metagenomes |
| utils | Some utilities for the package |
| utogig | Using thermodynamics to obtain geochemical information from... |
| yeast | Composition, localization, and abundances of proteins in... |
