canH2O: Water as a reactant in the differential expression of...
In jedick/JMDplots: Plots from Papers by Jeffrey M. Dick

canH2O

R Documentation

Water as a reactant in the differential expression of proteins in cancer

Description

Plots from the paper by Dick (2020). Function names ending with ‘⁠T*⁠’ and ‘⁠S*⁠’ refer to supplementary tables and figures.

Usage

  canH2O1(pdf = FALSE)
  canH2O2(pdf = FALSE)
  canH2O3(pdf = FALSE)
  canH2O4(pdf = FALSE)
  canH2OT1()
  canH2OT2()
  canH2OS1(pdf = FALSE)
  canH2OS2(pdf = FALSE)

Arguments

pdf

logical, make a PDF file?

Details

This table gives a brief description of each function.

`canH2O1`	Study overview
`canH2O2`	Median differences of \nH2O and \Zc for cell culture and cancer tissue
`canH2O3`	\nH2O-\Zc plots for TCGA and HPA datasets
`canH2O4`	Differentially expressed genes in aneuploid and osmotically shocked yeast cells
`canH2OT1`	Stoichiometric matrix for amino acids with QEC basis species
`canH2OT2`	Mean differences and p-values for all datasets in each condition
`canH2OS1`	\nO2-\Zc and \nH2O-\Zc correlations using QEC basis species
`canH2OS2`	HPA-TCGA scatterplots for \Zc and \nH2O

Acknowledgements

The results shown here are in part based upon data generated by the TCGA Research Network (https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga) and Human Protein Atlas (https://www.proteinatlas.org/).

References

Dick JM (2021) Water as a reactant in the differential expression of proteins in cancer. Comp. Sys. Onco. 1:e1007. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1002/cso2.1007")}