genoGOE: Earth's oxygenation recorded in genomes

In jedick/JMDplots: Plots from Papers by Jeffrey M. Dick

Earth's oxygenation recorded in genomes

Description

Plots from the manuscript by Dick (2025).

Usage

  genoGOE_1(pdf = FALSE)
  genoGOE_2(pdf = FALSE, metric = "Zc")
  genoGOE_3(pdf = FALSE)
  genoGOE_4(pdf = FALSE)
  genoGOE_5(pdf = FALSE)

Arguments

pdf	logical, make a PDF file?
metric	character, which metric to plot (see metrics)

Details

genoGOE_1	Genome-wide differences of oxidation state between two lineages of methanogens
genoGOE_2	Carbon oxidation state of proteins in eukaryotic gene age groups
genoGOE_3	Evolutionary oxidation of ancestral Rubiscos and relative stabilities as a function of redox and pH
genoGOE_4	Evolutionary oxidation and relative stabilities for genomes with S-cycling genes
genoGOE_5	Carbon oxidation state of ancestral and extant nitrogenases

References

Dick JM (2025) Manuscript in preparation.

Examples

genoGOE_2()

jedick/JMDplots documentation built on April 12, 2025, 1:35 p.m.