README.md

In jefferis/brainbaser: Programmatic Access to the Brainbase Drosophila Neuroanatomy Website

brainbaser

Introduction

Brainbase Web is an interactive website containing information about neurons in the Drosophila (fruit fly) nervous system. It includes brain expression patterns of a large collection of genetic driver lines, the Vienna Tiles (VT) collection. brainbaser enables programmatic queries of expression levels for different neuropil domains, download of image data and other utility functions.

Quick Start

For the impatient ...

# install
if (!require("devtools")) install.packages("devtools")
devtools::install_github("jefferis/brainbaser")

# use
library(brainbaser)

# run examples
example("neuropil_overlaps")

# get overview help for package
?brainbaser
# help for functions
?neuropil_overlaps

# run tests
library(testthat)
test_package("brainbaser")

Installation

Currently there isn't a released version on CRAN.

Development version

You can use the devtools package to install the development version:

if (!require("devtools")) install.packages("devtools")
devtools::install_github("jefferis/brainbaser")

Note: Windows users need Rtools and devtools to install this way.

jefferis/brainbaser documentation built on May 19, 2019, 2:50 a.m.