| annotation | A dataframe containing manual annotations of some FlyCircuit... |
| apclusterfc | Affinity propagation clustering of FlyCircuit neurons |
| as.data.frame.APResult | Convert APResult (apcluster output) to dataframe |
| download.file.wcheck | Download a remote file if it is new or updated |
| dpscan | Scan through a set of flycircuit neurons |
| drawRegionSurf | Draw surface corresponding to a given list of regions from... |
| fc_attach_bigmat | Attach a big.matrix (typically used for all-by-all blast... |
| fc_attach_ff | Attach an ff object (typically used for all-by-all blast... |
| fc_download_data | Download a data file from a remote location |
| fc_get_ids | Scrape FlyCircuit.tw for neuron IDs |
| fc_glom | Antennal lobe glomerulus (where applicable) for FlyCircuit... |
| fcgn_forfile | Return the flycircuit gene_name identifier for a file |
| fcidtable | fcidtable - Data.frame of flycircuit identifiers |
| fc_nblast | Return (normalised) nblast similarity scores for FlyCircuit... |
| fc_neuron_type | Return metadata including NeuronType for FlyCircuit neurons |
| fc_page | See a FlyCircuit neuron on the FlyCircuit website |
| fc_read_neurons | Fetch FlyCircuit neuron skeletons from the Taiwan FlyCircuit... |
| fc_sex | return sex of the animal for one or more FlyCircuit... |
| fc_subscoremat | Return scores (or distances) for given query and target... |
| fcwbnpsurf | Plot 3D surfaces of the FlyLight neuropil segmentation in... |
| FCWBNP.surf | FCWBNP.surf - Surface model of FlyLight neuropil segmentation... |
| fcwbsurf | Plot a 3D surface of the FlyCircuit reference brain |
| FCWB.surf | FCWB.surf - Surface model of FCWB FlyCircuit reference brain |
| flycircuit-ids | Convert between different FlyCircuit identifiers |
| flycircuit-package | Support functions for analysis of raw image data provided by... |
| getRegionsFromSurf | Return a list of regions contained in a surface |
| getRegionSurf | Creates a new surface containing specified regions from a... |
| hclustfc | Cluster a set of FlyCircuit neurons identified by gene_name |
| kcs20scores | A matrix containing all by all nblast similarity scores for... |
| load_fcdata | Load an rda/rds object cached on disk into the Global... |
| load_fcdb | Load a database cached in the db subfolder into the Global... |
| load_si_data | Load NBLAST supplemental data objects, downloading when... |
| plot3d.APResult | Plot exemplar neurons/all cluster members after clustering by... |
| plot3dfc | Plot FlyCircuit neurons using rgl |
| pop3dfc | Remove plotted FlyCircuit neurons (deprecated, see... |
| selectRegionsFromSurf | Select regions from a surface |
