dpscan | R Documentation |
Can also choose to select specific neurons along the way and navigate
forwards and backwards. NB this is simply a wrapper for
nat::nlscan
, with the additional function of converting all
neuron identifiers to standard flycircuit identifiers.
dpscan( neurons, db = NULL, col = "red", Verbose = T, Wait = T, sleep = 0.1, extrafun = NULL, selected_file = NULL, selected_col = "green", yaml = TRUE, ... )
neurons |
vector of flycircuit identifiers to plot *(anything that
|
db |
the neuronlist containing the neurons. Defaults to the list named
by |
col |
the colour with which to plot the neurons (default |
Verbose |
logical indicating that info about each selected neuron should
be printed (default |
Wait |
logical indicating that there should be a pause between each displayed neuron. |
sleep |
time to pause between each displayed neuron when
|
extrafun |
an optional function called when each neuron is plotted, with
args |
selected_file |
an optional path to a |
selected_col |
the color in which selected neurons (such as those
specified in |
yaml |
a logical indicating that selections should be saved to disk in
|
... |
extra arguments to pass to |
A character vector of names of any selected neurons, of length 0 if none selected.
nlscan
, fc_gene_name
## Not run: # numeric idids, specifying db explicitly dpscan(c(1024L, 10616L, 8399L), db=kcs20) # using an option to set db op<-options(nat.default.neuronlist='kcs20') dpscan(c("fru-M-500112", "Gad1-F-900005", "Gad1-F-100010")) options(op) ## End(Not run)
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