Man pages for jefferis/gphys
Analyse Electrophysiology Data Acquired by 'Neuromatic' / 'Igor Pro'

AddLinesToRasterPlotAdd eg voltage traces to existing spike raster plot
as.mpsthConvert a list of STAR psth objects into an mpsth object
as.repeatedTrainGeneric function to convert spikes to STAR as.repeatedTrain...
as.ts.mpsthConvert a multi-psth list into a (multi) time series object
as.ts.psthConvert a STAR psth into a (multi) time series object
CollectSpikesFromSweepsRead in Igor Pro exported text file of Nclamp spike times
divideDivide spiketimes object with multiple repeats into list with...
finder_colourQuery the colour label of a file in the MacOS X Finder
finder_colour_fastQuery the colour label of a file in the MacOS X Finder
fix.oddFix the odour labels in an odd config
gphys-packageAnalyse electrophysiology data acquired by Neuromatic / Igor...
IgorWavesForSpikesFind the Igor waves matching a set of spikes (even if...
is.spiketimesTest if object is of class spiketimes
lifetime_sparsenessCalculate lifetime sparseness according to Olsen et al. 2008
MakeAverageWavesMake average (analogue) waves that match a spiketimes object
mean.mtsTake the mean of all the columns in a multi-time series (mts)...
merge.spiketimesMerge two spiketimes lists with different ODD configs
OdourResponseFromSpikesProduce table of spiking responses (optionally subtracting...
open-brace-psthExtract one or more psth objects to make a new mpsth list
open-brace-spiketimesExtract one or more spiketimes objects as a new spiketimes...
plot.mpsthPlot PSTHs for multiple neurons (or multiple stimuli)
PlotOdourResponseFromSpikesBoxplot of spikes within a window (optionally less a...
PlotRasterFromSweepsMake a raster plot from a set of Nclamp sweeps recording...
plus-spiketimesCombine multiple compatible spiketimes series (to plot as...
read.oddRead in the ODD text file describing odour presentation...
scale.tsRescale the y values of a (multi-)time series (ts) object
set_finder_colourSet the colour label of a file in the MacOS X Finder See...
smooth_decimateBoxcar smooth and decimate a time series
smpsthGenerate smooth PSTHs for a set of spike trains
spiketimesMake spiketimes object (spike times + stimulus info) from...
split.spiketimesSplit a spiketimes object with multiple repeats into list...
subset.spiketimesMake a new spiketimes object containing only sweeps for an...
tsp.nclamppxpGet time series properties for an Nclamp pxp file
tsp.psthFind start, end and frequency of a STAR psth object Checks...
jefferis/gphys documentation built on May 17, 2017, 4:04 p.m.