Man pages for jefferis/gphys
Analyse Electrophysiology Data Acquired by 'Neuromatic' / 'Igor Pro'

AddLinesToRasterPlotAdd eg voltage traces to existing spike raster plot
as.mpsthConvert a list of STAR psth objects into an mpsth object
as.repeatedTrainGeneric function to convert spikes to STAR as.repeatedTrain...
as.ts.mpsthConvert a multi-psth list into a (multi) time series object
as.ts.psthConvert a STAR psth into a (multi) time series object
CollectSpikesFromSweepsRead in Igor Pro exported text file of Nclamp spike times
divideDivide spiketimes object with multiple repeats into list with...
finder_colourQuery the colour label of a file in the MacOS X Finder
finder_colour_fastQuery the colour label of a file in the MacOS X Finder
fix.oddFix the odour labels in an odd config
gphys-packageAnalyse electrophysiology data acquired by Neuromatic / Igor...
IgorWavesForSpikesFind the Igor waves matching a set of spikes (even if...
is.spiketimesTest if object is of class spiketimes
lifetime_sparsenessCalculate lifetime sparseness according to Olsen et al. 2008
MakeAverageWavesMake average (analogue) waves that match a spiketimes object
mean.mtsTake the mean of all the columns in a multi-time series (mts)...
merge.spiketimesMerge two spiketimes lists with different ODD configs
OdourResponseFromSpikesProduce table of spiking responses (optionally subtracting...
open-brace-psthExtract one or more psth objects to make a new mpsth list
open-brace-spiketimesExtract one or more spiketimes objects as a new spiketimes...
plot.mpsthPlot PSTHs for multiple neurons (or multiple stimuli)
PlotOdourResponseFromSpikesBoxplot of spikes within a window (optionally less a...
PlotRasterFromSweepsMake a raster plot from a set of Nclamp sweeps recording...
plus-spiketimesCombine multiple compatible spiketimes series (to plot as...
read.oddRead in the ODD text file describing odour presentation...
scale.tsRescale the y values of a (multi-)time series (ts) object
set_finder_colourSet the colour label of a file in the MacOS X Finder See...
smooth_decimateBoxcar smooth and decimate a time series
smpsthGenerate smooth PSTHs for a set of spike trains
spiketimesMake spiketimes object (spike times + stimulus info) from...
split.spiketimesSplit a spiketimes object with multiple repeats into list...
subset.spiketimesSubset spiketimes object to contain only sweeps for an odour...
tsp.nclamppxpGet time series properties for an Nclamp pxp file
tsp.psthFind start, end and frequency of a STAR psth object Checks...
jefferis/gphys documentation built on July 3, 2018, 2:02 p.m.