flywatch-package: Behaviour Analysis for Fly Tracking Data

In jefferislab/flywatch: Analyse fly behaviour data

Description

For the time being this is focussed on Yoshi Aso's four quadrant optogenenetic behaviour devloped at HHMI Janelia Research Campus.

Yoshi Behaviour Rig

For the time being this package focuses on analsyis of data derived from the four quadrant behaviour rig originally described in Aso et al. 2014.

See the following functions:

• read_ybr_summary

• read_ybr_xy

• plot_ybr

• plot_smoothed_displacement

for some interesting entry points to this code.

References

Mushroom body output neurons encode valence and guide memory-based action selection in Drosophila. Aso Y, Sitaraman D, Ichinose T, Kaun KR, Vogt K, Belliart-Guerin G, Placais PY, Robie AA, Yamagata N, Schnaitmann C, Rowell WJ, Johnston RM, Ngo TT, Chen N, Korff W, Nitabach MN, Heberlein U, Preat T, Branson KM, Tanimoto H, Rubin GM.. eLIFE. 2014 Dec 23;3:e04580. doi: 10.7554/eLife.04580.

See Also

Useful links:

• Report bugs at https://github.com/jefferislab/flywatch/issues

jefferislab/flywatch documentation built on Aug. 6, 2021, 12:14 p.m.