find_ybr_tiffs: Find all the Yoshi behaviour tiffs in a directory hierarchy
In jefferislab/flywatch: Analyse fly behaviour data

Description Usage Arguments Value See Also Examples

Find all the Yoshi behaviour tiffs in a directory hierarchy

1	find_ybr_tiffs(path = ".", recursive = TRUE, full.names = TRUE)

`path`	a character vector of full path names; the default corresponds to the working directory, `getwd()`. Tilde expansion (see `path.expand`) is performed. Missing values will be ignored. Elements with a marked encoding will be converted to the native encoding (and if that fails, considered non-existent).
`recursive`	logical. Should the listing recurse into directories?
`full.names`	a logical value. If `TRUE`, the directory path is prepended to the file names to give a relative file path. If `FALSE`, the file names (rather than paths) are returned.

A data.frame containing information about the identified tiffs

Other read_ybr: read_ybr_summary(), read_ybr_tiff(), read_ybr_xy()

find_ybr_tiffs(system.file("ybr_tiffs", package='flywatch'))

## Not run: 
## Make some plots for all the experiments in a directory
tiffdf=find_ybr_tiffs("/path/to/my/flydata")
for(i in 1:nrow(tiffdf)){
  intiff=tiffdf[i,'tiff']
  outpdf=paste0(basename(dirname(intiff)),'.pdf')
  pdf(outpdf)
  plot_smoothed_displacement(intiff)
  dev.off()
  cat(".")
}

## End(Not run)