download_gse_data | Download a dataset from GEO via GEOquery |
extract_experimental_groups | Extract the experimental groups from ExpressionSet metadata |
extract_expr_data | Extract expression data from ESet object |
extract_or_convert_gene_ids | Extract Gene IDs from FeatureData or Convert from Probes |
pick_soft_threshold | Pick soft threshold for WGCNA |
run_wgcna | Run WGCNA to group genes into related modules |
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