extract_expr_data: Extract expression data from ESet object

In jeffreyLbrabec/tinker: Tissue Network Knowledge Transfer

Description

Extract expression data from ESet object

Usage

extract_expr_data(gse_ESet = NULL)

Arguments

gse_ESet

ExpressionSet S4 object that contains expression data along with an array of relevent metadata for your chosen GSE dataset

Value

list[expr_data, num_data] both objects are needed for downstream analysis. Often, expr_data will have relevant gene names, or some other gene identifier of interest while num_data is just a table of expression values with sample names (e.g. GSM2886523) as column headers.

Examples

gene_expression_tables <- list()

gse <- download_gse_data("GSE108000")

 gene_expression_table <- extract_expr_data(gse) 

jeffreyLbrabec/tinker documentation built on Nov. 4, 2019, 2:37 p.m.