Files in jenzopr/singlecellutils
Utility functions for single-cell data

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DESCRIPTION

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NAMESPACE

NEWS.md R/clustering.R R/data.R R/differential_tests.R R/dimension_reduction.R R/filter.R R/reexports.R R/transition_index.R R/visualization.R R/weighting.R README.md

_pkgdown.yml

data/neuron_1k_v3.rda

docs/LICENSE-text.html

docs/articles/index.html

docs/articles/singlecellutils-dimensionreduction.html

docs/articles/singlecellutils-dimensionreduction_files/figure-html/hdbscan-visualization-1.png

docs/articles/singlecellutils-dimensionreduction_files/figure-html/umap-explore-distance-1.png

docs/articles/singlecellutils-dimensionreduction_files/figure-html/umap-explore-neighbors-1.png

docs/articles/singlecellutils-dimensionreduction_files/figure-html/umap-figure-1.png

docs/articles/singlecellutils-filtering.html

docs/articles/singlecellutils-filtering_files/figure-html/feature-filtering-distribution-eval-1.png

docs/articles/singlecellutils-filtering_files/figure-html/feature-filtering-distribution-eval-2.png

docs/articles/singlecellutils-filtering_files/figure-html/sample-filtering-distribution-eval-1.png

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docs/reference/EpOverA.html

docs/reference/FanoOverA.html

docs/reference/L2norm.html

docs/reference/MeanBelowA.html

docs/reference/MeanOverA.html

docs/reference/add_clustering.html

docs/reference/add_fraction_of_identity.html

docs/reference/add_heterogeneity.html

docs/reference/add_transition_index.html

docs/reference/approx_svd.html

docs/reference/boot_subsample.html

docs/reference/bootstrap_transition_index.html

docs/reference/bw.inequality.fun.html

docs/reference/calcFNWeight.html

docs/reference/calcFractionOfIdentity.html

docs/reference/calcMeansPerCondition.html

docs/reference/calcSOM.html

docs/reference/calculateClusterCenter.html

docs/reference/calculate_qc_map.html

docs/reference/colon-equals.html

docs/reference/colorAMap.html

docs/reference/compute_transition_index.html

docs/reference/constructHexNeighborhood.html

docs/reference/construct_filters.html

docs/reference/createSingleCellExperiment.html

docs/reference/cv2.fun.html

docs/reference/discover_element.html

docs/reference/dot-lrde_pval.html

docs/reference/dropout.fun.html

docs/reference/fano.fun.html

docs/reference/filter.html

docs/reference/filter_features.html

docs/reference/filter_samples.html

docs/reference/filterfunctions.html

docs/reference/generate_mutationhash.html

docs/reference/getSOMgenes.html

docs/reference/gini.fun.html

docs/reference/grapes-greater-than-grapes.html

docs/reference/hdbscan.html

docs/reference/hdbscan_.html

docs/reference/heterogeneity.html

docs/reference/hex_corner.html

docs/reference/hexcoords2.html

docs/reference/hvg.html

docs/reference/hvg.plot.html

docs/reference/index.html

docs/reference/inequality.fun.html

docs/reference/isomds.html

docs/reference/lrde_test.html

docs/reference/map.init.html

docs/reference/map.init.local.html

docs/reference/n_filterfun.html

docs/reference/neuron_1k_v3.html

docs/reference/norm.theil.t.html

docs/reference/normByBin.html

docs/reference/normByWindow.html

docs/reference/plotSilhouette.html

docs/reference/randomized_svd.html

docs/reference/reduce_dimension.html

docs/reference/scSOM.html

docs/reference/scaterIsOutlier.html

docs/reference/sigmoid.html

docs/reference/substitution_set.html

docs/reference/summarizeSOM.html

docs/reference/svd.html

docs/reference/tSOM.html

docs/reference/tf_idf.html

docs/reference/theils.between.html

docs/reference/theils.t.html

docs/reference/theils.within.html

docs/reference/thin_counts.html

docs/reference/umap.html

docs/reference/visMarkerBar.html

docs/reference/visSOM.html

docs/reference/winsorize.html

man/add_clustering.Rd man/add_transition_index.Rd man/boot_subsample.Rd man/bootstrap_transition_index.Rd man/calculate_qc_map.Rd man/colon-equals.Rd man/compute_transition_index.Rd man/constructHexNeighborhood.Rd man/construct_filters.Rd man/discover_element.Rd man/dot-lrde_pval.Rd man/filter.Rd man/filterfunctions.Rd man/grapes-greater-than-grapes.Rd man/hdbscan.Rd man/hdbscan_.Rd man/isomds.Rd man/lrde_test.Rd man/map.init.Rd man/map.init.local.Rd man/n_filterfun.Rd man/neuron_1k_v3.Rd man/plotComplexHeatmap.Rd man/plotSilhouette.Rd man/reduce_dimension.Rd man/scSOM.Rd man/scaterIsOutlier.Rd man/svd.Rd man/tf_idf.Rd man/umap.Rd

singlecellutils.Rproj

vignettes/.gitignore

vignettes/singlecellutils-dimensionreduction.Rmd vignettes/singlecellutils-filtering.Rmd

jenzopr/singlecellutils documentation built on June 12, 2019, 2:51 a.m.

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jenzopr/singlecellutils
Utility functions for single-cell data

Files in jenzopr/singlecellutils
Utility functions for single-cell data

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jenzopr/singlecellutils Utility functions for single-cell data

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jenzopr/singlecellutils
Utility functions for single-cell data

Files in jenzopr/singlecellutils
Utility functions for single-cell data