bootstrap_transition_index: Run non-parametric bootstrapping for critical transition...

In jenzopr/singlecellutils: Utility functions for single-cell data

Description

Run non-parametric bootstrapping for critical transition index values and a grouping variable

Usage

bootstrap_transition_index(object, exprs_values, grouping,
  features = NULL, n = 20, R = 999, ...)

Arguments

object	A SingleCellExperiment object.
exprs_values	String indicating which assay contains the data that should be used to calculate IC.
grouping	A single character indicating the column of colData to use as grouping, or a factor of length > 1.
features	A character vector (of feature names), a logical vector or numeric vector (of indices) specifying the features to use for calculation. The default of NULL will use all features.
n	The subsample size for non-parametric bootstrapping.
R	The bootstrapping size.
...	Additional parameters passed to ....

Value

A matrix with all bootstrap samples per grouping level (R rows, length(levels(group)) columns)

jenzopr/singlecellutils documentation built on June 12, 2019, 2:51 a.m.