calculate_qc_map: Calculates a 2D QC map of cells based on quality features

In jenzopr/singlecellutils: Utility functions for single-cell data

Description

Calculates a 2D QC map of cells based on quality features

Usage

calculate_qc_map(object, features, slot = "qcmap", ...)

Arguments

object	A SingleCellExperiment object.
features	A character vector with column names form colData(object) that are used to calculate the map.
slot	Determines which entry of the reducedDims slot to use for QC embedding.
...	Additional parameters passed onto Rtsne.

Value

A SingleCellExperiment object with modified reducedDims slot.

jenzopr/singlecellutils documentation built on June 12, 2019, 2:51 a.m.