jeremymcrae/cifer: CNV Inheritance from Exome Read-Depths

Classifies the inheritance of CNV calls using exome read-depth data. This classifies each CNV as maternally, paternally, biparentally inherited, or not inherited. Attempts to separate not inherited CNVs into false positive CNV calls and true de novos. Allows for uncertain classifications, and also includes some error states. The source code can be found at: url(https://github.com/jeremymcrae/cifer).

install.packages("remotes")
remotes::install_github("jeremymcrae/cifer")