mart.genesnps: retrieves a gene's all snps

In jerryzhujian9/bz: bio Zhu's miscellaneous R functions

Description

retrieves a gene's all snps

Usage

mart.genesnps(
  values = "CRHR1",
  filters = "hgnc_symbol",
  attributes = c("variation_name", "validated", "allele", "minor_allele",
    "minor_allele_freq", "transcript_count", "clinical_significance", "ensembl_gene_id",
    "chromosome_name", "start_position", "end_position", "band", "external_gene_name",
    "description"),
  host = NULL
)

Arguments

values	the actual input data values, cannot be all empty, but partial empty/NA fine, ensembl_gene_id, ENSG00000118473, c('ENSG00000118473', 'ENSG00000162426'). If vector, should be the same id type
filters	row filters in the db, input data type, 'hgnc_symbol' "ensembl_gene_id"(ENSG00000118473),"hgnc_id"(HGNC:25412),"entrezgene" (84251),"kegg_enzyme"(00010+1.1.1.1),"go_id"(GO:0030122),"ucsc"(uc057hhx.1)
attributes	column attributes, what to return
host	default 'www.ensembl.org'. Other eg, 'grch37.ensembl.org', 'aug2017.archive.ensembl.org'. See all, run mart.list

Value

returns a data frame

jerryzhujian9/bz documentation built on Jan. 12, 2022, 9:45 a.m.