Man pages for jessicaaudreylee/PhenoEvoR
Tools for analysis of NetLogo Pheno-Evo model results
| barcode.timecourse | Plot abundance of barcode lineages over time. |
| calc.fun.div | Calculate functional diversity of the phenotypic or genotypic... |
| cell.abundance.timecourse | Plot total cell population and toxin concentration over time |
| degrade.rate.heatmap | Heatmap showing average phenotypic degrade rate in many... |
| degraderate.snapshot | Replot values of degrade-rate in 2D space |
| degrade.rate.timecourse | Plot population distribution of degrade.rate over time |
| degraderate.variogram | Calculate the variogram for degrade.rate for a given... |
| extract.endpoint | Extract the final timepoints from a set of NetLogo experiment... |
| extractnumeric | Extract a set of numeric values from a single cell of a... |
| extractXYdr | Interpret the "xydr" variable from Pheno-Evo model runs |
| generation.heatmap | Heatmap showing average number of generations in many... |
| parsefactors.norm | Factors from the character values from a single cell of a... |
| parsenumeric | Histogram from the numeric values from a single cell of a... |
| PE.ends | A sample final-timepoint dataset from a Pheno-Evo experiment |
| PhenoEvoData_run4 | A small PhenoEvoDataset for example use - a single run,... |
| PhenoEvoData_small | A small PhenoEvoDataset for example use - a few runs, last 10... |
| phenoevo.heatmap | Heatmap showing population average of custom variable in many... |
| phenotype.histogram | Plot all distributions of phenotypic degrade rates at the... |
| response.error.heatmap | Heatmap showing average response error in many Pheno-Evo... |
| response.error.timecourse | Plot population distribution of response.error over time |
| summarize.endpoint | Take population average of single-cell traits |
| survival.heatmap | Heatmap of population survival duration in NetLogo... |
| switch.rate.heatmap | Heatmap showing average switch rate in many Pheno-Evo... |
| switch.rate.timecourse | Plot population distribution of switch.rate over time |
