degraderate.variogram: Calculate the variogram for degrade.rate for a given...

In jessicaaudreylee/PhenoEvoR: Tools for analysis of NetLogo Pheno-Evo model results

Description

This function adapts Pheno-Evo data and then uses [gstat::variogram()] from the gstat package to calculate spatial correlation in the phenotypic degrade rate values of the cells. It returns a dataframe. For a variogram plot, call plot() on the dataframe - see examples.

Usage

degraderate.variogram(ends.df, run.num)

Arguments

ends.df	Dataframe of endpoint data, generated by extract.endpoint(). Must contain an xydr column.
run.num	Run number to be analyzed.

Details

Dataframes from timepoints other than the endpoint are also fine, as long as there is only 1 row per run number.

Value

An object of class gstatVariogram. See [gstat::variogram()] for documentation

Examples

data(PE.ends)
degraderate.variogram(PE.ends, 4)
plot(degraderate.variogram(PE.ends, 4))

jessicaaudreylee/PhenoEvoR documentation built on Sept. 7, 2020, 3:50 a.m.