Files in jfq3/RDPutils
R Utilities for Processing RDPTool Output
.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
R/anRpackage-internal.R
R/assoc_repseq_IDs_with_otus_by_clstr.R
R/assoc_repseq_IDs_with_otus_by_fasta.R
R/clstr2otu.R
R/count_char_occurrences.R
R/get_digits.R
R/get_repseq_IDs_from_fasta.R
R/hier2phyloseq.R
R/import_itagger_otutab_taxa.R
R/import_otutab_taxa.R
R/import_sintax_file.R
R/import_usearch_biom_file.R
R/import_utax_file.R
R/make_framebot_tax_table.R
R/make_otu_names.R
R/make_tax_table.R
R/reformat_taxa_names.R
R/remove_model_seqs.R
R/rename_fasta.R
R/select_seqs.R
R/simple_cap.R
R/split_clstr_file.R
R/trim_fasta_names.R
R/unalign_fasta.R
RDPutils.Rproj
README.md
data/.Rhistory
data/assoc.table.rda
data/otu.rda
data/sam.data.rda
inst/doc/command-line_RDPTools_workflow.R
inst/doc/command-line_RDPTools_workflow.Rmd
inst/doc/command-line_RDPTools_workflow.html
inst/doc/usearch_workflows.R
inst/doc/usearch_workflows.Rmd
inst/doc/usearch_workflows.html
inst/doc/web-based_RDPTools_workflow.R
inst/doc/web-based_RDPTools_workflow.Rmd
inst/doc/web-based_RDPTools_workflow.html
inst/extdata/.Rhistory
inst/extdata/WI_ext_sam.txt
inst/extdata/all_seq_complete.clust
inst/extdata/all_seq_complete.clust_classified.biom
inst/extdata/all_seq_complete.clust_rep_seqs.fasta
inst/extdata/dist_03.clust
inst/extdata/fixrank_classified.txt
inst/extdata/match_cluster_machine_name.txt
inst/extdata/match_taxa_machine_names.txt
inst/extdata/my_expt_tree.nwk
inst/extdata/otu_03_table_only.json
inst/extdata/otu_03_table_only.txt
inst/extdata/otu_03_tax_table.json
inst/extdata/otu_03_tax_table.txt
inst/extdata/otus_03.fa
inst/extdata/rdp_classified_03.txt
inst/extdata/renamed.fasta
inst/extdata/rep.tree.nwk
inst/extdata/rformat_dist_0.03.txt
inst/extdata/sam_data.txt
inst/extdata/sintax_tax_table.txt
inst/extdata/test_hier.txt
inst/extdata/unaligned_short_names.fasta
inst/extdata/usearch_03_tree.nwk
inst/extdata/utax_tax_table_03.txt
man/RDPutils-package.Rd
man/assoc.table.Rd
man/assoc_repseq_IDs_with_otus_by_clstr.Rd
man/assoc_repseq_IDs_with_otus_by_fasta.Rd
man/clstr2otu.Rd
man/count_char_occurrences.Rd
man/get_digits.Rd
man/get_repseq_IDs_from_fasta.Rd
man/hier2phyloseq.Rd
man/import_itagger_otutab_taxa.Rd
man/import_otutab_taxa.Rd
man/import_sintax_file.Rd
man/import_usearch_biom_file.Rd
man/import_utax_file.Rd
man/make_framebot_tax_table.Rd
man/make_otu_names.Rd
man/make_tax_table.Rd
man/otu.Rd
man/reformat_taxa_names.Rd
man/remove_model_seqs.Rd
man/rename_fasta.Rd
man/sam.data.Rd
man/select_seqs.Rd
man/simple_cap.Rd
man/split_clstr_file.Rd
man/trim_fasta_names.Rd
man/unalign_fasta.Rd
vignettes/command-line_RDPTools_workflow.Rmd
vignettes/usearch_workflows.Rmd
vignettes/web-based_RDPTools_workflow.Rmd
