Files in jfq3/RDPutils
R Utilities for Processing RDPTool Output

.RData
.Rbuildignore
.Rhistory
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
R/anRpackage-internal.R R/assoc_repseq_IDs_with_otus_by_clstr.R R/assoc_repseq_IDs_with_otus_by_fasta.R R/clstr2otu.R R/count_char_occurrences.R R/get_repseq_IDs_from_fasta.R R/hier2phyloseq.R R/import_itagger_otutab_taxa.R R/import_otutab_taxa.R R/import_sintax_file.R R/import_usearch_biom_file.R R/import_utax_file.R R/make_framebot_tax_table.R R/make_otu_names.R R/make_tax_table.R R/remove_model_seqs.R R/rename_fasta.R R/select_seqs.R R/simple_cap.R R/split_clstr_file.R R/trim_fasta_names.R R/unalign_fasta.R
RDPutils.Rproj
README.md
data/.Rhistory
data/assoc.table.rda
data/otu.rda
data/sam.data.rda
inst/extdata/all_seq_complete.clust
inst/extdata/all_seq_complete.clust_rep_seqs.fasta
inst/extdata/dist_03.clust
inst/extdata/fixrank_classified.txt
inst/extdata/merged_aligned.fasta
inst/extdata/names_trimmed.fasta
inst/extdata/renamed.fasta
inst/extdata/rep.tree.nwk
inst/extdata/rformat_dist_0.03.txt
inst/extdata/test_hier.txt
man/RDPutils-package.Rd man/assoc.table.Rd man/assoc_repseq_IDs_with_otus_by_clstr.Rd man/assoc_repseq_IDs_with_otus_by_fasta.Rd man/clstr2otu.Rd man/count_char_occurrences.Rd man/get_repseq_IDs_from_fasta.Rd man/hier2phyloseq.Rd man/import_itagger_otutab_taxa.Rd man/import_otutab_taxa.Rd man/import_sintax_file.Rd man/import_usearch_biom_file.Rd man/import_utax_file.Rd man/make_otu_names.Rd man/make_tax_table.Rd man/otu.Rd man/remove_model_seqs.Rd man/rename_fasta.Rd man/sam.data.Rd man/select_seqs.Rd man/simple_cap.Rd man/split_clstr_file.Rd man/trim_fasta_names.Rd man/unalign_fasta.Rd
vignettes/Sample_workflow-concordance.tex
vignettes/Sample_workflow.Rnw
vignettes/Sample_workflow.log
vignettes/Sample_workflow.pdf
vignettes/Sample_workflow.synctex.gz
vignettes/Sample_workflow.tex
vignettes/dist_03.clust
vignettes/framed.sty
vignettes/names_trimmed.fasta
vignettes/renamed.fasta
vignettes/usearch_workflow-concordance.tex
vignettes/usearch_workflow.Rnw
vignettes/usearch_workflow.tex
jfq3/RDPutils documentation built on Jan. 14, 2018, 1:28 p.m.