Man pages for jfq3/RDPutils
R Utilities for Processing RDPTool Output
| assoc_repseq_IDs_with_otus_by_clstr | Associate Representative Sequence IDs with OTUs from Cluster... |
| assoc_repseq_IDs_with_otus_by_fasta | Associate Representative Sequences with OTUs from Fasta... |
| assoc.table | Example of an Association Table |
| clstr2otu | Create an OTU Table from a Cluster File |
| count_char_occurrences | Count Occurrences of a Character |
| get_digits | Get digits |
| get_repseq_IDs_from_fasta | Get Representative Sequence Names |
| hier2phyloseq | Classification File Converter |
| import_itagger_otutab_taxa | Import iTagger File |
| import_otutab_taxa | Import USEARCH otutab_taxa File into phyloseq |
| import_sintax_file | Import sintax Taxonomy File |
| import_usearch_biom_file | Import a USEARCH biom File |
| import_utax_file | Import utax Taxonomy File |
| make_framebot_tax_table | make_framebot_tax_table |
| make_otu_names | Make OTU Names |
| make_tax_table | Make a Phyloseq tax_table from Classifier Result |
| otu | Example of an OTU Table |
| RDPutils-package | RDPutils |
| reformat_taxa_names | Reformat Taxa Names |
| remove_model_seqs | Remove Model Sequences |
| rename_fasta | Rename Representative Sequences |
| sam.data | An example of a Sample Data Table |
| select_seqs | Select Fasta Sequences |
| simple_cap | simple_cap |
| split_clstr_file | Split a Cluster File |
| trim_fasta_names | Trim Representative Sequence Names |
| unalign_fasta | Unalign a Fasta File |
