matrix_graph: Plotting a matrix graph
In jgalgarra/kcorebip: Bipartite networks kcore decomposition and visualization

View source: R/matrix_graph.R

matrix_graph

R Documentation

Plotting a matrix graph

Description

This function plots the matrix graph of a bipartite network. Configuration parameters and results are stored in a global environment called mat. This environment is not destroyed after the function is executed, so the developer can store it in a configuration file, retrieve

Usage

matrix_graph(
  datadir,
  filename,
  style = "matrix",
  orderby = "kradius",
  label_strguilda = "Plant",
  label_strguildb = "Pollinator",
  label_size = 18,
  color_guild_a = "#4169E1",
  color_guild_b = "#FF1808",
  color_links = "grey7",
  flip_matrix = FALSE,
  links_weight = FALSE,
  show_species_names = TRUE,
  show_title = TRUE,
  show_legend = TRUE,
  print_to_file = FALSE,
  plotsdir = "plot_results/",
  plot_size = 10,
  ppi = 300,
  progress = NULL
)

Arguments

`datadir`	the name of the file of the interaction matrix
`filename`	the file with the interaction matrix
`label_strguilda`	string labels of guild a
`label_strguildb`	string labels of guild b
`label_size`	base label size
`color_guild_a`	default filling for nodes of guild_a
`color_guild_b`	default filling for nodes of guild_b
`color_links`	color of matrix interactions
`flip_matrix`	to switch row/column guilds,
`links_weight`	show links weight as a gradient of color for weighted networks
`show_species_names`	add species name to number,
`show_title`	show network name as plot title,
`show_legend`	show guilds legend,
`print_to_file`	print plot to file,
`plotsdir`	default print directory
`plot_size`	in inches for printed plot,
`ppi`	dots per inch
`progress`	for interactive visualization
`orderkcoremaxby`	sets order of nodes, by kradius, kdegree or degree