polar_graph: Plotting a polar graph

In jgalgarra/kcorebip: Bipartite networks kcore decomposition and visualization

Plotting a polar graph

Description

This function plots the polar graph of a bipartite network and the histograms of kshell kradius and kdegree

Usage

polar_graph(
  datadir,
  filename,
  plotsdir = "plot_results/polar/",
  print_to_file = FALSE,
  pshowtext = FALSE,
  show_histograms = TRUE,
  glabels = c("Plant", "Pollinator"),
  gshortened = c("pl", "pol"),
  lsize_title = 22,
  lsize_axis = 16,
  lsize_legend = 16,
  lsize_axis_title = 16,
  lsize_legend_title = 16,
  file_name_append = "",
  print_title = TRUE,
  printable_labels = 0,
  fill_nodes = TRUE,
  alpha_nodes = 0.5,
  max_kradius = 0,
  progress = NULL
)

Arguments

datadir	the directory where the filename file is stored
filename	the name of the file of the interaction matrix
plotsdir	the directory where the plot is stored
print_to_file	if set to FALSE the plot is displayed in the R session window
pshowtext	auxiliar for interactive apps, do not modify
show_histograms	display the histograms if set TRUE
glabels	guild labels
gshortened	guild shortened labels
lsize_title	title label size
lsize_axis	axis label size
lsize_legend	legend label size
lsize_axis_title	axis title size
lsize_legend_title	legend label size
file_name_append	a label that the user may append to the plot file name for convenience
print_title	show title and network parameters
printable_labels	range of labeled species
fill_nodes	if set to FALSE nodes are transparent
alpha_nodes	fill transparency level
max_kradius	if bigger than 0 sets an upper limit different of the default. Useful for comparisons
progress	auxiliar for interactive apps, do not modify

Examples

polar_graph("data/","M_PL_007.csv",plotsdir="grafresults/",print_to_file = TRUE)

jgalgarra/kcorebip documentation built on June 14, 2025, 12:33 a.m.