fungalTraits_annotation: Assigns Fungal Guilds using FungalTraits database

In jgmv/misctools: Miscellaneous tools for general use

Assigns Fungal Guilds using FungalTraits database

Description

Assigns fungal guilds using the FungalTraits database (https://doi.org/10.1007/s13225-020-00466-2) by comparing genus names. In the case of Glomeromycota, assignment to arbuscular mycorrhizal lifestyles can be optionally done at the phylum level.

Usage

fungalTraits_annotation(
  x,
  print_missing = F,
  amf = T,
  coltaxa = c("genus", "phylum")
)

Arguments

x	a data frame with taxonomy data.
print_missing	whether taxa not found in the database should be displayed.
amf	whether Glomeromycota are assigned to arbuscular mycorrhizas at the phylum level.
coltaxa	names of columns with genus and phylum, respectively.

Value

data frame

Examples

fungalTraits_annotation(example_taxonomy)

jgmv/misctools documentation built on March 24, 2024, 12:05 p.m.