plot_krona: Plot Krona chart
In jgmv/misctools: Miscellaneous tools for general use
plot_krona R Documentation
Plot Krona chart
Description
Plots a Krona chart from a taxonomy data set, with the option of including abundance data.
Requires a local install, with system-wide access, of KronaTools (https://github.com/marbl/Krona/tree/master/KronaTools).
Usage
plot_krona(tax, cdm = NULL, group = NULL, outfile = "krona_plot.html")
Arguments
tax
data frame with taxonomy data
cdm
community data matrix, or vector with total taxon abundance
group
a groupping vector for samples
outfile
name of the output file
Value
An html file with a Krona chart.
jgmv/misctools documentation built on March 24, 2024, 12:05 p.m.
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| plot_krona | R Documentation |
Plot Krona chart
Description
Plots a Krona chart from a taxonomy data set, with the option of including abundance data. Requires a local install, with system-wide access, of KronaTools (https://github.com/marbl/Krona/tree/master/KronaTools).
Usage
plot_krona(tax, cdm = NULL, group = NULL, outfile = "krona_plot.html")
Arguments
tax |
data frame with taxonomy data |
cdm |
community data matrix, or vector with total taxon abundance |
group |
a groupping vector for samples |
outfile |
name of the output file |
Value
An html file with a Krona chart.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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