Description Usage Arguments Value Examples
Reads a GMT file containing a gene set from MSigDB and returns a list of named gene sets
1 |
file |
path to the downloaded GMT file |
tidy |
turn into a tidy tibble with |
returns a named list of the gene set
1 2 3 4 5 | kegg_path <- system.file("extdata", "c2.cp.kegg.v6.2.symbols.gmt.txt",
package = "readgmt")
kegg <- read_gmt(kegg_path)
head(names(kegg))
head(kegg$KEGG_COLORECTAL_CANCER)
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