tidy_gmt: Convert the GMT to a "tidy" tibble
In jhrcook/readgmt: Read GMT gene set files from MSigDB
Description
Usage
Arguments
Value
Examples
Description
Sometimes, the data is wanted in a "tidy" format with each piece
of information as an individual row. tidy_gmt() converts the list
output of read_gmt() to a tibble.
Usage
1
tidy_gmt(gmt)
Arguments
gmt
a gmt from read_gmt()
Value
a tibble with columns "gene_set" and "gene"
Examples
1
2
3
4
kegg_path <- system.file("extdata", "c2.cp.kegg.v6.2.symbols.gmt.txt",
package = "readgmt")
kegg <- read_gmt(kegg_path)
tidy_gmt(kegg)
jhrcook/readgmt documentation built on Oct. 21, 2019, 7:51 p.m.
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Description Usage Arguments Value Examples
Description
Sometimes, the data is wanted in a "tidy" format with each piece
of information as an individual row. tidy_gmt() converts the list
output of read_gmt() to a tibble.
Usage
1 | tidy_gmt(gmt)
|
Arguments
gmt |
a gmt from |
Value
a tibble with columns "gene_set" and "gene"
Examples
1 2 3 4 | kegg_path <- system.file("extdata", "c2.cp.kegg.v6.2.symbols.gmt.txt",
package = "readgmt")
kegg <- read_gmt(kegg_path)
tidy_gmt(kegg)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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