Files in jhsiao999/peco
A Supervised Approach for Predicting Cell Cycle Progression Using Single-Cell RNA-seq Data

.Rbuildignore
.circleci/config.yml
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/circ_dist.R R/cycle_npreg.R R/data.R R/data_transform_quantile.R R/fit_cyclic_many.R R/fit_cyclic_one.R R/intensity2circle.R R/shift_origin.R R/zzz.R README.md
README_files/figure-gfm/unnamed-chunk-7-1.png
README_files/figure-gfm/unnamed-chunk-8-1.png
README_files/figure-markdown_github/unnamed-chunk-7-1.png
_pkgdown.yml
appveyor.yml
data/cellcyclegenes_whitfield2002.rda
data/model_5genes_predict.rda
data/model_5genes_train.rda
data/sce_top101genes.rda
data/training_human.rda
docs/404.html
docs/LICENSE-text.html
docs/_config.yml
docs/articles/index.html
docs/articles/peco.html
docs/articles/peco_files/figure-html/plot-predictions-single-gene-1.png
docs/articles/peco_files/figure-html/plot-predictions-top-genes-1.png
docs/articles/peco_files/figure-html/unnamed-chunk-8-1.png
docs/articles/peco_files/figure-html/unnamed-chunk-9-1.png
docs/articles/vignette.html
docs/articles/vignette_files/figure-html/unnamed-chunk-8-1.png
docs/articles/vignette_files/figure-html/unnamed-chunk-9-1.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/cellcyclegenes_whitfield2002.html
docs/reference/circ_dist.html
docs/reference/cycle_npreg_insample.html
docs/reference/cycle_npreg_loglik.html
docs/reference/cycle_npreg_mstep.html
docs/reference/cycle_npreg_outsample-1.png
docs/reference/cycle_npreg_outsample.html
docs/reference/data_transform_quantile-1.png
docs/reference/data_transform_quantile.html
docs/reference/fit_bspline-1.png
docs/reference/fit_bspline.html
docs/reference/fit_cyclical_many.html
docs/reference/fit_loess-1.png
docs/reference/fit_loess.html
docs/reference/fit_trendfilter-1.png
docs/reference/fit_trendfilter.html
docs/reference/index.html
docs/reference/initialize_grids.html
docs/reference/intensity2circle-1.png
docs/reference/intensity2circle.html
docs/reference/model_5genes_predict.html
docs/reference/model_5genes_train.html
docs/reference/rotation-1.png
docs/reference/rotation-2.png
docs/reference/rotation.html
docs/reference/sce_top101genes.html
docs/reference/shift_origin-1.png
docs/reference/shift_origin.html
docs/reference/training_human.html
inst/CITATION
man/cellcyclegenes_whitfield2002.Rd man/circ_dist.Rd man/cycle_npreg_insample.Rd man/cycle_npreg_loglik.Rd man/cycle_npreg_mstep.Rd man/cycle_npreg_outsample.Rd man/data_transform_quantile.Rd man/fit_bspline.Rd man/fit_cyclical_many.Rd man/fit_loess.Rd man/fit_trendfilter.Rd man/initialize_grids.Rd man/intensity2circle.Rd man/model_5genes_predict.Rd man/model_5genes_train.Rd man/rotation.Rd man/sce_top101genes.Rd man/shift_origin.Rd man/training_human.Rd vignettes/peco.Rmd
jhsiao999/peco documentation built on Nov. 21, 2020, 5:34 p.m.