Files in jhsiao999/peco

A Supervised Approach for Predicting Cell Cycle Progression Using Single-Cell RNA-seq Data

.Rbuildignore

.circleci/config.yml

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/circ_dist.R R/cycle_npreg.R R/data.R R/data_transform_quantile.R R/fit_cyclic_many.R R/fit_cyclic_one.R R/intensity2circle.R R/shift_origin.R R/zzz.R README.md

README_files/figure-gfm/unnamed-chunk-7-1.png

README_files/figure-gfm/unnamed-chunk-8-1.png

README_files/figure-markdown_github/unnamed-chunk-7-1.png

_pkgdown.yml

appveyor.yml

data/cellcyclegenes_whitfield2002.rda

data/model_5genes_predict.rda

data/model_5genes_train.rda

data/sce_top101genes.rda

data/training_human.rda

docs/404.html

docs/LICENSE-text.html

docs/_config.yml

docs/articles/index.html

docs/articles/peco.html

docs/articles/peco_files/figure-html/plot-predictions-single-gene-1.png

docs/articles/peco_files/figure-html/plot-predictions-top-genes-1.png

docs/articles/peco_files/figure-html/unnamed-chunk-8-1.png

docs/articles/peco_files/figure-html/unnamed-chunk-9-1.png

docs/articles/vignette.html

docs/articles/vignette_files/figure-html/unnamed-chunk-8-1.png

docs/articles/vignette_files/figure-html/unnamed-chunk-9-1.png

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

docs/reference/Rplot002.png

docs/reference/cellcyclegenes_whitfield2002.html

docs/reference/circ_dist.html

docs/reference/cycle_npreg_insample.html

docs/reference/cycle_npreg_loglik.html

docs/reference/cycle_npreg_mstep.html

docs/reference/cycle_npreg_outsample-1.png

docs/reference/cycle_npreg_outsample.html

docs/reference/data_transform_quantile-1.png

docs/reference/data_transform_quantile.html

docs/reference/fit_bspline-1.png

docs/reference/fit_bspline.html

docs/reference/fit_cyclical_many.html

docs/reference/fit_loess-1.png

docs/reference/fit_loess.html

docs/reference/fit_trendfilter-1.png

docs/reference/fit_trendfilter.html

docs/reference/index.html

docs/reference/initialize_grids.html

docs/reference/intensity2circle-1.png

docs/reference/intensity2circle.html

docs/reference/model_5genes_predict.html

docs/reference/model_5genes_train.html

docs/reference/rotation-1.png

docs/reference/rotation-2.png

docs/reference/rotation.html

docs/reference/sce_top101genes.html

docs/reference/shift_origin-1.png

docs/reference/shift_origin.html

docs/reference/training_human.html

inst/CITATION

man/cellcyclegenes_whitfield2002.Rd man/circ_dist.Rd man/cycle_npreg_insample.Rd man/cycle_npreg_loglik.Rd man/cycle_npreg_mstep.Rd man/cycle_npreg_outsample.Rd man/data_transform_quantile.Rd man/fit_bspline.Rd man/fit_cyclical_many.Rd man/fit_loess.Rd man/fit_trendfilter.Rd man/initialize_grids.Rd man/intensity2circle.Rd man/model_5genes_predict.Rd man/model_5genes_train.Rd man/rotation.Rd man/sce_top101genes.Rd man/shift_origin.Rd man/training_human.Rd vignettes/peco.Rmd

jhsiao999/peco documentation built on Nov. 21, 2020, 5:34 p.m.