Man pages for jhsiao999/peco
A Supervised Approach for Predicting Cell Cycle Progression Using Single-Cell RNA-seq Data
| cellcyclegenes_whitfield2002 | List of Cell Cycle Genes Identified in Whitfield et al, 2002. |
| circ_dist | Pairwise Distance Between Two Circular Variables |
| cycle_npreg_insample | Obtain Cyclic Trend Estimates from Training Data |
| cycle_npreg_loglik | Infer Angles or Cell Cycle Phase Using Gene Expression Data |
| cycle_npreg_mstep | Estimate Parameters of the Cyclic Trends |
| cycle_npreg_outsample | Predict Test-sample Ordering Using Training Labels |
| data_transform_quantile | Quantile-normalize CPM for Each Gene |
| fit_bspline | Estimate Cyclic Trends in Gene Expression Levels Using... |
| fit_cyclical_many | Estimate Cyclic Trend For Several Genes Using Trendfiltering |
| fit_loess | Estimate Cyclic Trends of Expression Values Using Loess |
| fit_trendfilter | Estimate Cyclic Trend of Gene Expression Using Trendfiltering |
| initialize_grids | Initialize Grid for cycle_npreg_loglik |
| intensity2circle | Infer Angles for Single-cell Samples Using Fluorescence... |
| model_5genes_predict | Cell-Cycle Predictions using 5 Genes |
| model_5genes_train | Model Training Results for 5 Genes |
| rotation | Rotate Circular Variable to Minimize Distance Between... |
| sce_top101genes | Molecule Counts of the 101 Significant Cyclical Genes in the... |
| shift_origin | Shift Origin of Angles |
| training_human | Training Data from the Top 101 Cyclic Genes in 888... |
