Files in jiangyuan2li/quickpath
Quick Pathway Analysis
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/extract_genes_by_pathway.R
R/fig_path_ggplot2.R
R/grab_deg_from_cuffdiff.R
R/hypergeometric_test.R
README.md
data-raw/DATABASE.R
data-raw/E10.5_gene_exp.diff
data-raw/E9.5_gene_exp.diff
data-raw/gene_exp_Chow.diff
data-raw/gene_exp_MCD.diff
data-raw/gene_exp_egg.diff
data-raw/genes_pathways_gga.csv
data-raw/genes_pathways_hsa.csv
data-raw/genes_pathways_mmu.csv
data-raw/gga_path_gene_list.rds
data-raw/gga_pathway.csv
data-raw/hsa_path_gene_list.rds
data-raw/hsa_pathway.csv
data-raw/mart_gga.rds
data-raw/mart_hsa.rds
data-raw/mart_mmu.rds
data-raw/mmu_path_gene_list.rds
data-raw/mmu_pathway.csv
data-raw/sample_data.R
data/gene_exp.diff.rda
data/gene_exp.diff_chow.rda
data/gene_exp.diff_e105.rda
data/gene_exp.diff_e95.rda
data/gene_exp.diff_egg.rda
data/gga_genes_pathways.rda
data/gga_mart.rda
data/gga_path_gene_list.rda
data/gga_pathway.rda
data/hsa_genes_pathways.rda
data/hsa_mart.rda
data/hsa_path_gene_list.rda
data/hsa_pathway.rda
data/mmu_genes_pathways.rda
data/mmu_mart.rda
data/mmu_path_gene_list.rda
data/mmu_pathway.rda
doc/tutorial.R
doc/tutorial.Rmd
doc/tutorial.html
man/check_pathway_name.Rd
man/extract_genes_by_pathway.Rd
man/fig_path.Rd
man/grab_degs_from_cuffdiff.Rd
man/pathway_analysis.Rd
man/pathway_analysis_meth.Rd
quickpath.Rproj
vignettes/.gitignore
vignettes/tutorial.Rmd
