grab_degs_from_cuffdiff: Grab differential expressed genes (DEGs) from cuffdiff result
In jiangyuan2li/quickpath: Quick Pathway Analysis
Description
Usage
Arguments
Value
Examples
View source: R/grab_deg_from_cuffdiff.R
Description
Grab differential expressed genes (DEGs) from cuffdiff result
Usage
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grab_degs_from_cuffdiff(
gene_exp.diff,
out.name = NULL,
class = c("mmu", "gga", "hsa"),
criterion = c("p_value", "q_value"),
cut.off = 0.05
)
Arguments
gene_exp.diff
a dataframe from cuffdiff result
out.name
If specified, the output will be written to this file.
criterion
p_value or q_value
cut.off
significance level
Value
A dataframe contains all DEGs with gene symvbols.
Examples
1
2
3
jiangyuan2li/quickpath documentation built on Dec. 8, 2019, 4:05 p.m.
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Description Usage Arguments Value Examples
View source: R/grab_deg_from_cuffdiff.R
Description
Grab differential expressed genes (DEGs) from cuffdiff result
Usage
1 2 3 4 5 6 7 | grab_degs_from_cuffdiff(
gene_exp.diff,
out.name = NULL,
class = c("mmu", "gga", "hsa"),
criterion = c("p_value", "q_value"),
cut.off = 0.05
)
|
Arguments
gene_exp.diff |
a dataframe from cuffdiff result |
out.name |
If specified, the output will be written to this file. |
criterion |
p_value or q_value |
cut.off |
significance level |
Value
A dataframe contains all DEGs with gene symvbols.
Examples
1 2 3 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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