pathway_analysis_meth: hypergeometric test for DNA-methylation seq
In jiangyuan2li/quickpath: Quick Pathway Analysis
Description
Usage
Arguments
Value
Examples
View source: R/hypergeometric_test.R
Description
hypergeometric test for DNA-methylation seq
Usage
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pathway_analysis_meth(
sig.genes,
total.genes,
class = c("mmu", "hsa", "gga"),
mc.cores = 8
)
Arguments
sig.genes
A vector of significantly changed genes
total.genes
A vector of total genes
class
Specify which type of gene
mc.cores
Specify how many cores to use
Value
A list of all significantly changed pathways, and all pathways with p value
Examples
1
path_res = pathway_analysis_meth(sig.genes, class = "mmu")
jiangyuan2li/quickpath documentation built on Dec. 8, 2019, 4:05 p.m.
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Description Usage Arguments Value Examples
View source: R/hypergeometric_test.R
Description
hypergeometric test for DNA-methylation seq
Usage
1 2 3 4 5 6 | pathway_analysis_meth(
sig.genes,
total.genes,
class = c("mmu", "hsa", "gga"),
mc.cores = 8
)
|
Arguments
sig.genes |
A vector of significantly changed genes |
total.genes |
A vector of total genes |
class |
Specify which type of gene |
mc.cores |
Specify how many cores to use |
Value
A list of all significantly changed pathways, and all pathways with p value
Examples
1 | path_res = pathway_analysis_meth(sig.genes, class = "mmu")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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